My stock UK 06 busa does exactly the same thing. The milage is currently 2600, and 6 months old. As I write this, it's sat at the dealers with the Suzuki rep inspecting it. The problem started approx. 200-300 miles ago. Initially just a small vibration noise that I chose to ignore, it's turned into a nasty buzz that really gets me worried, to the point that I won't ride it till it's gone. I can live with the 4500-4900 vibes, but not this one.
Mine does it in any gear and neutral, moving or stationary. It's definately not transmission related, although I've got a clunky gearchange and a knock when I set off sometimes. With the tank up I can hear a slight tappet noise at tickover. And trying to hold 2200 rpm with the twistgrip is virtually impossible. It's my first fuel injected bike and I'm not impressed. Are power commander's a good investment?
One last thing. Some of us ride slow at times, so comments like "ride it like you stole it" aren't constructive to us guys with the problem. I can see the funny side and would laugh if it wasn't mine playing up. I love to open it up but a few things put a stop to it.
1, My wife is permanantly on the pillion seat and I've nearly lost her twice due to the grunt!
2, UK roads are crap! Our roads are designed very biker unfriendly, and are poorly maintained with nice deep potholes ready to bounce you off, or manhole covers on the riding line going round bends, ready to wipe your back end out at the slightest sniff of dampness.
3, Speed cameras! They're popping up everywhere! When you do find a good road to have a blast on, the fuzz pick up on it very quickly and send in the un-marked camera cars.
4. Inconsiderate and dangerous car and van drivers. Bikers are looked upon as scum by about 80% of UK drivers, and they go to great extremes to keep you behind them.