Turbo Rick, good to hear you got 4hp from modding the airbox, but would have expected more, the TLRs get easy 7+.
Surprised to hear removing the airfilter only gave 1hp... Was the day getting hotter as you did the tests?
Johhnie B, the tip over sensor is not mercury, it is a small brass ring around a U shaped plastic runner. Makes a simple mechanical connection when the bike falls over. Some of the TLR guys remove them, especially if racing. No need for a resistor (someone suggested?), if it is the same unit as on the TLR, just unplug it and forget.
Turbo Rick, about the dealer switch. This is used to put the ECM into "program" mode ready to remap the fuel injection, and when in dealer mode it disables the "yoshi" remap. The yoshi remap has a dial for idle (actually steady throttle). If your bike has been re-mapped and you flip the dealer switch it will temporarily "unmap" it. Hence the difference in idle mixture and revs. If the bike is on a stock map, the switch won't affect idle speed.
The yoshi remap is actually NOT a "re-map", it is a simple modifier, so the ECM uses the original map, and just adds or subtracts a small percentage based on what modifiers you have given it. There is a modifier for low, medium, high, steady ranges.
Many of the problems you guys are having are old news to TLR owners, your fuel injection system is based on ours (with some improvements I bet!), but still very similar.