Busa pumps can be a drag. I've repaired a couple.The 99-01 models are even worse,than the in-tank ones.
If yer just going to re/re a different pump in there Charles,check and clean the injector screens,and carefully inspect all the fuel lines.Busa's had some cheap fuel lines in some years(I had one split on me once,that is no fun).
I'm betting that the crummy filter Zook used has started disintegrating and is now through out your system.
While yer sitting around not riding,take the pump apart,clean it,re-asembly without the fuel filter and see what happens.
Good time to check the inside of the tank for rust and crud while yer at it. If the inside of the tank is rusty,you can fix her up by Red Coating it. I can walk you thru that if need be.
Rubb.