This graph shows why you don't want a power commander.
A power commander only allows you to control 1 set of injectos, uppers or lowers, take your pick. They recommend the lowers, reason being is that below 5K rpm the upper do nothing, so by installing the power commander on the upper injectors would allow no tuning adjustments to be made below 5000 RPM, and probably not a whole lot above 5000 RPm if at light throttle etc.
You can see on a stock busa the upper and lower injector duty cycle's vs RPM. At peak hp, about 23% of the total fuel being supplied to the 182 hp engine is being done by the lower injectors. that equates to about 40 hp out of the total 182 hp is being supplied to the engine via the lower injectors.
So now you install a power commander on the lower set, so that you can still make idle and part throttle adjustments, and you want to start adding fuel for say a 40 shot of nitrous.
Well with the power commander all you can do is go up to +100% fuel, so you can double what the lower injector is putting out, bringing it up maybe 40 hp, i think in practice people haven't been able to get even that high.
So the solution is easy, just buy another power commander, another $300 and control the uppers completely seperately than the lowers.
What a hassle in my opinion.
At least Bazzaz lets you control all 8 using 1 map.
ECU flashing does the same, you want more fuel, no problem you enter whatever you want in ecu editor, and it asks for more fuel (via both sets of injectors).
not to mention you can do timing with ecu editor (add another couple hundred bucks for a power commander ignition module), you can remove the 6th gear restriction (add another 100 and something bucks for an X-tre, which does a crappy job at this anyway), you can use the ecu as an air shifter kill box (add another $100), you can run map switching with ecu with just the price of a toggle switch ($3 at radio shack), (add another couple hundred for a power commander hub and map switch).
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I have stated my case LOL
Greg