Well, I've had salmonella before and there is no way I would knowingly risk eating suspect meat. Thawing in the fridge is the correct way, not in a sink or on the counter top. Hopefully it is ok though.
They should be fine. But, for next time, here's a handy dandy chart of government guidelines. Basically, if it still feels refrigerator cold, you can refreeze them. Toss them if they're fully thawed and have been at >40F for more than 2 hrs.
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