I'm all about correct ride height and handling, but I like to ride wheelies and rail corners, I even still skim a knee, on rare occasion anymore.
But, truth be told, down in flat Florida, where you're mainly cruising in a straight line, lowering the bike a little isn't going to kill it.
Still aim for the best sag numbers that you can get, so the suspension works well and transfers as little motion into the frame, and the front and rear do effect each other.
And as you may have already found out, if you lean over too far in a turn, it's much easier for the road to pull your foot off the peg or force and upshift, as you have less ground clearance.
Neither is a big deal either, just something to be aware of.
If you the lower the front equally, you can gain some handling, but at the expense of less ground clearance...and flattened header tubes are not uncommon, lol.
Ultimately, if you aren't comfortable, then you aren't enjoying yourself, so set it where you like it, and are in control for your riding style.