Great to hear.
There is a saying "batteries do not just die, they are murdered." The same goes for the stator and rectifier. If they were excessively taxed by an existing problem, that will burn them up, and burn up your new set too. Ten thousand miles is not nearly enough mileage to burn up the Hayabusa charging system. Something else, either solved or existing contributed to that.
If you have not I would run the electrical tests in the manual - AC voltage, DC voltage, leakage/short-circuit test. I would also inspect and clean grounds and high power connections like the headlights and sounds like perhaps you looked at the fuel pump.
Why run voltage tests with a new charging system one may ask? To be sure that new pump is fine. If it draws excessive power, it would drop the voltage below spec. Also the short-circuit test would see if that pump or anything else is energized with the bike off, straining the system.
If all came out in spec I might assume that the prior owner ran the bike a long way on a dead battery, power-throttling it to get home, which could have burned up the charging system.