That is basically exactly what mine is doing. Cutting up hard as hell around the same points.
New Fuel lines, New fuel filter, New fuel pump GSL396 (more flow), New NGK Cr9e gapped to .18, another oil change with Castrol GTX 10w-40, full system coolant flush and refill completely with Engine Ice. Had a miss detected when I used the HealTech S-01 to check codes, have reset, the TPS, and the Idle Valve ( mild improvement at idle),. New rectifier going on this week as the last one just took a dump. Had a LSR mechanic/Racer/Tuner, and NHRA Mechanic of over 30 years look it over. Still doing it. Seems like an ignition cut. Fuel gauge shows fine at idle but not like it is putting in enough fuel. Tops out at 53psi.
Any help appreciated and sorry to piggyback.
I have David Thompson's old 08 Blue and Gold LSR Turbo Hayabusa with the RCC Stage 2 Ultra setup, AMS 1000, rewired by Rob at Boosted Cycle, etc.